Index A | B | C | D | E | F | G | H | I | L | M | N | P | R | S | T | U | V | X A Anionic (class in prolif.interactions.interactions) B Barcode (class in prolif.plotting.barcode) BasePiStacking (class in prolif.interactions.base) BaseRDKitMol (class in prolif.rdkitmol) bitvector() (prolif.fingerprint.Fingerprint method) C Cationic (class in prolif.interactions.interactions) CationPi (class in prolif.interactions.interactions) centroid (prolif.rdkitmol.BaseRDKitMol attribute) close() (prolif.parallel.Progress method) COLORS (prolif.plotting.barcode.Barcode attribute) (prolif.plotting.complex3d.Complex3D attribute) (prolif.plotting.network.LigNetwork attribute) compare() (prolif.plotting.complex3d.Complex3D method) Complex3D (class in prolif.plotting.complex3d) count (prolif.fingerprint.Fingerprint attribute) D delay (prolif.parallel.Progress attribute) DISABLE_HOVER_CALLBACK (prolif.plotting.complex3d.Complex3D attribute) display() (prolif.plotting.barcode.Barcode method) (prolif.plotting.complex3d.Complex3D method) (prolif.plotting.network.LigNetwork method) display_residues() (in module prolif.plotting.residues) Distance (class in prolif.interactions.base) DoubleAngle (class in prolif.interactions.base) E EdgeToFace (class in prolif.interactions.interactions) event_loop() (prolif.parallel.Progress method) executor() (prolif.parallel.MolIterablePool class method) (prolif.parallel.TrajectoryPool class method) F FaceToFace (class in prolif.interactions.interactions) Fingerprint (class in prolif.fingerprint) from_atom() (prolif.residue.ResidueId class method) from_fingerprint() (prolif.plotting.barcode.Barcode class method) (prolif.plotting.complex3d.Complex3D class method) (prolif.plotting.network.LigNetwork class method) from_mda() (prolif.molecule.Molecule class method) from_pickle() (prolif.fingerprint.Fingerprint class method) from_rdkit() (prolif.molecule.Molecule class method) from_string() (prolif.residue.ResidueId class method) G generate() (prolif.fingerprint.Fingerprint method) get_residues_near_ligand() (in module prolif.utils) H HBAcceptor (class in prolif.interactions.interactions) HBDonor (class in prolif.interactions.interactions) Hydrophobic (class in prolif.interactions.interactions) I IFP (class in prolif.ifp) ifp (prolif.fingerprint.Fingerprint attribute) initializer() (prolif.parallel.MolIterablePool class method) (prolif.parallel.TrajectoryPool class method) Interaction (class in prolif.interactions.base) INTERACTION_HOVER_CALLBACK (prolif.plotting.complex3d.Complex3D attribute) interactions (prolif.fingerprint.Fingerprint attribute) invert_role() (prolif.interactions.base.Interaction class method) L LIGAND_DISPLAYED_ATOM (prolif.plotting.complex3d.Complex3D attribute) LIGAND_RING_INTERACTIONS (prolif.plotting.complex3d.Complex3D attribute) LIGAND_STYLE (prolif.plotting.complex3d.Complex3D attribute) LigNetwork (class in prolif.plotting.network) list_available() (prolif.fingerprint.Fingerprint static method) M metadata() (prolif.fingerprint.Fingerprint method) (prolif.interactions.base.Interaction method) MetalAcceptor (class in prolif.interactions.interactions) MetalDonor (class in prolif.interactions.interactions) module prolif.fingerprint prolif.ifp prolif.interactions.base prolif.interactions.interactions prolif.molecule prolif.parallel prolif.plotting.barcode prolif.plotting.complex3d prolif.plotting.network prolif.plotting.residues prolif.rdkitmol prolif.residue prolif.utils mol2_supplier (class in prolif.molecule) Molecule (class in prolif.molecule) MolIterablePool (class in prolif.parallel) N n_interactions (prolif.fingerprint.Fingerprint attribute) n_residues (prolif.molecule.Molecule attribute) (prolif.residue.ResidueGroup attribute) P pdbqt_supplier (class in prolif.molecule) PEPTIDE_STYLE (prolif.plotting.complex3d.Complex3D attribute) PEPTIDE_THRESHOLD (prolif.plotting.complex3d.Complex3D attribute) PiCation (class in prolif.interactions.interactions) PiStacking (class in prolif.interactions.interactions) plot_3d() (prolif.fingerprint.Fingerprint method) plot_barcode() (prolif.fingerprint.Fingerprint method) plot_lignetwork() (prolif.fingerprint.Fingerprint method) pool (prolif.parallel.MolIterablePool attribute) (prolif.parallel.TrajectoryPool attribute) process() (prolif.parallel.MolIterablePool method) (prolif.parallel.TrajectoryPool method) Progress (class in prolif.parallel) prolif.fingerprint module prolif.ifp module prolif.interactions.base module prolif.interactions.interactions module prolif.molecule module prolif.parallel module prolif.plotting.barcode module prolif.plotting.complex3d module prolif.plotting.network module prolif.plotting.residues module prolif.rdkitmol module prolif.residue module prolif.utils module PROTEIN_DISPLAYED_ATOM (prolif.plotting.complex3d.Complex3D attribute) PROTEIN_RING_INTERACTIONS (prolif.plotting.complex3d.Complex3D attribute) PROTEIN_STYLE (prolif.plotting.complex3d.Complex3D attribute) R resid (prolif.residue.Residue attribute) Residue (class in prolif.residue) RESIDUE_HOVER_CALLBACK (prolif.plotting.complex3d.Complex3D attribute) RESIDUE_TYPES (prolif.plotting.network.LigNetwork attribute) ResidueGroup (class in prolif.residue) ResidueId (class in prolif.residue) residues (prolif.molecule.Molecule attribute) RESIDUES_STYLE (prolif.plotting.complex3d.Complex3D attribute) run() (prolif.fingerprint.Fingerprint method) run_from_iterable() (prolif.fingerprint.Fingerprint method) S save() (prolif.plotting.network.LigNetwork method) sdf_supplier (class in prolif.molecule) select() (prolif.residue.ResidueGroup method) show() (prolif.plotting.network.LigNetwork method) SingleAngle (class in prolif.interactions.base) T to_bitvectors() (in module prolif.utils) (prolif.fingerprint.Fingerprint method) to_countvectors() (prolif.fingerprint.Fingerprint method) to_dataframe() (in module prolif.utils) (prolif.fingerprint.Fingerprint method) to_pickle() (prolif.fingerprint.Fingerprint method) tqdm_pbar (prolif.parallel.Progress attribute) tracker (prolif.parallel.TrajectoryPool attribute) TrajectoryPool (class in prolif.parallel) U update() (prolif.parallel.Progress method) V VdWContact (class in prolif.interactions.interactions) vicinity_cutoff (prolif.fingerprint.Fingerprint attribute) X XBAcceptor (class in prolif.interactions.interactions) XBDonor (class in prolif.interactions.interactions) xyz (prolif.rdkitmol.BaseRDKitMol attribute)