ProLIF
v0.3.2
User guide
Installation
Citation
Changelog
Tutorials
1. Quickstart
2. How-to
3. Protein-protein interactions
4. Visualisation
Documentation
Summary
Molecules
Interaction fingerprint
Plotting
Residues
Helper functions
ProLIF
»
Index
Edit on GitHub
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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P
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R
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S
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T
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X
_
_BaseCationPi (class in prolif.interactions)
_BaseHBond (class in prolif.interactions)
_BaseIonic (class in prolif.interactions)
_BaseMetallic (class in prolif.interactions)
_BaseXBond (class in prolif.interactions)
_Distance (class in prolif.interactions)
_InteractionMeta (class in prolif.interactions)
A
Anionic (class in prolif.interactions)
B
BaseRDKitMol (class in prolif.rdkitmol)
bitvector() (prolif.fingerprint.Fingerprint method)
bitvector_atoms() (prolif.fingerprint.Fingerprint method)
C
Cationic (class in prolif.interactions)
CationPi (class in prolif.interactions)
centroid (prolif.rdkitmol.BaseRDKitMol attribute)
COLORS (prolif.plotting.network.LigNetwork attribute)
D
display() (prolif.plotting.network.LigNetwork method)
E
EdgeToFace (class in prolif.interactions)
F
FaceToFace (class in prolif.interactions)
Fingerprint (class in prolif.fingerprint)
from_atom() (prolif.residue.ResidueId class method)
from_ifp() (prolif.plotting.network.LigNetwork class method)
from_mda() (prolif.molecule.Molecule class method)
from_rdkit() (prolif.molecule.Molecule class method)
from_string() (prolif.residue.ResidueId class method)
G
generate() (prolif.fingerprint.Fingerprint method)
get_mapindex() (in module prolif.interactions)
get_residues_near_ligand() (in module prolif.utils)
H
HBAcceptor (class in prolif.interactions)
HBDonor (class in prolif.interactions)
Hydrophobic (class in prolif.interactions)
I
ifp (prolif.fingerprint.Fingerprint attribute)
Interaction (class in prolif.interactions)
interactions (prolif.fingerprint.Fingerprint attribute)
L
LigNetwork (class in prolif.plotting.network)
list_available() (prolif.fingerprint.Fingerprint static method)
M
MetalAcceptor (class in prolif.interactions)
MetalDonor (class in prolif.interactions)
module
prolif.fingerprint
prolif.interactions
prolif.molecule
prolif.plotting.network
prolif.rdkitmol
prolif.residue
prolif.utils
mol2_supplier() (in module prolif.molecule)
Molecule (class in prolif.molecule)
N
n_interactions (prolif.fingerprint.Fingerprint attribute)
n_residues (prolif.molecule.Molecule attribute)
(prolif.residue.ResidueGroup attribute)
P
pdbqt_supplier() (in module prolif.molecule)
PiCation (class in prolif.interactions)
PiStacking (class in prolif.interactions)
prolif.fingerprint
module
prolif.interactions
module
prolif.molecule
module
prolif.plotting.network
module
prolif.rdkitmol
module
prolif.residue
module
prolif.utils
module
R
resid (prolif.residue.Residue attribute)
Residue (class in prolif.residue)
RESIDUE_TYPES (prolif.plotting.network.LigNetwork attribute)
ResidueGroup (class in prolif.residue)
ResidueId (class in prolif.residue)
residues (prolif.molecule.Molecule attribute)
run() (prolif.fingerprint.Fingerprint method)
run_from_iterable() (prolif.fingerprint.Fingerprint method)
S
save() (prolif.plotting.network.LigNetwork method)
sdf_supplier() (in module prolif.molecule)
select() (prolif.residue.ResidueGroup method)
show() (prolif.plotting.network.LigNetwork method)
T
to_bitvectors() (in module prolif.utils)
(prolif.fingerprint.Fingerprint method)
to_dataframe() (in module prolif.utils)
(prolif.fingerprint.Fingerprint method)
X
XBAcceptor (class in prolif.interactions)
XBDonor (class in prolif.interactions)
xyz (prolif.rdkitmol.BaseRDKitMol attribute)
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v: v0.3.2
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